HL_11KH_045

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

11KH|1|28|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_045 not in the Motif Atlas

Homologous match to HL_9PN5_014

Geometric discrepancy: 0.0944

The information below is about HL_9PN5_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

11KH|1|28|U|1317
11KH|1|28|C|1318
11KH|1|28|U|1319
11KH|1|28|U|1320
11KH|1|28|G|1321
11KH|1|28|A|1322
11KH|1|28|A|1323
11KH|1|28|A|1324
11KH|1|28|C|1325
11KH|1|28|A|1326

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain L3

60S ribosomal protein L3

Chain dd

60S ribosomal protein L27a