HL_11KH_049
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGUGCGAAU
- Length
- 10 nucleotides
- Bulged bases
- 11KH|1|28|U|1596, 11KH|1|28|A|1600, 11KH|1|28|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11KH_049 not in the Motif Atlas
- Homologous match to HL_9AXU_018
- Geometric discrepancy: 0.0883
- The information below is about HL_9AXU_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.4
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 13
Unit IDs
11KH|1|28|A|1593
11KH|1|28|C|1594
11KH|1|28|G|1595
11KH|1|28|U|1596
11KH|1|28|G|1597
11KH|1|28|C|1598
11KH|1|28|G|1599
11KH|1|28|A|1600
11KH|1|28|A|1601
11KH|1|28|U|1602
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 37
- 60S ribosomal protein L37
- Chain L3
- 60S ribosomal protein L3
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