HL_11KH_051

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

11KH|1|28|C|1676, 11KH|1|28|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_051 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.2028

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.3

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

11KH|1|28|C|1675
11KH|1|28|C|1676
11KH|1|28|U|1677
11KH|1|28|C|1678
11KH|1|28|A|1679
11KH|1|28|G|1680

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 29

Large ribosomal subunit protein eL29

Chain 42

eL42

Chain dd

60S ribosomal protein L27a