HL_9H3G_028

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

9H3G|1|A|C|968, 9H3G|1|A|A|971

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.2

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

9H3G|1|A|C|967
9H3G|1|A|C|968
9H3G|1|A|PSU|969
9H3G|1|A|C|970
9H3G|1|A|A|971
9H3G|1|A|G|972

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AG

Large ribosomal subunit protein eL13z

Chain AR

60S ribosomal protein L29

Chain BD

Large ribosomal subunit protein eL42z/eL42y

Chain Ha

Large ribosomal subunit protein uL15x