HL_11KH_081

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_081 not in the Motif Atlas

Homologous match to HL_8GLP_061

Geometric discrepancy: 0.1221

The information below is about HL_8GLP_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.4

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

10

Unit IDs

11KH|1|28|G|4250
11KH|1|28|A|4251
11KH|1|28|C|4252
11KH|1|28|A|4253
11KH|1|28|G|4254
11KH|1|28|A|4255
11KH|1|28|A|4256
11KH|1|28|A|4257
11KH|1|28|C|4258

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 11

60S ribosomal protein L11