HL_11KH_092

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

11KH|1|28|G|4694, 11KH|1|28|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_092 not in the Motif Atlas

Homologous match to HL_9PN5_065

Geometric discrepancy: 0.0734

The information below is about HL_9PN5_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.5

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

13

Unit IDs

11KH|1|28|C|4688
11KH|1|28|U|4689
11KH|1|28|G|4690
11KH|1|28|A|4691
11KH|1|28|A|4692
11KH|1|28|C|4693
11KH|1|28|G|4694
11KH|1|28|C|4695
11KH|1|28|C|4696
11KH|1|28|U|4697
11KH|1|28|C|4698
11KH|1|28|U|4699
11KH|1|28|A|4700
11KH|1|28|A|4701
11KH|1|28|G|4702

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 40

Large ribosomal subunit protein eL40

Chain L9

60S ribosomal protein L9

Chain bb

Large ribosomal subunit protein uL13