HL_12DP_027

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

12DP|1|1A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_027 not in the Motif Atlas

Homologous match to HL_1MMS_003

Geometric discrepancy: 0.4796

The information below is about HL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

12DP|1|1A|C|1064
12DP|1|1A|U|1065
12DP|1|1A|U|1066
12DP|1|1A|A|1067
12DP|1|1A|G|1068
12DP|1|1A|A|1069
12DP|1|1A|A|1070
12DP|1|1A|G|1071
12DP|1|1A|C|1072
12DP|1|1A|A|1073
12DP|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains