HL_12DP_038

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

12DP|1|1A|A|1616, 12DP|1|1A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_038 not in the Motif Atlas

Homologous match to HL_8B0X_068

Geometric discrepancy: 0.058

The information below is about HL_8B0X_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

12DP|1|1A|C|1612
12DP|1|1A|G|1613
12DP|1|1A|A|1614
12DP|1|1A|C|1615
12DP|1|1A|A|1616
12DP|1|1A|C|1617
12DP|1|1A|A|1618
12DP|1|1A|G|1619

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1W

50S ribosomal protein L22