HL_12DP_048

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

12DP|1|1A|A|2030, 12DP|1|1A|A|2031, 12DP|1|1A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_048 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.1022

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

12

Unit IDs

12DP|1|1A|G|2027
12DP|1|1A|U|2028
12DP|1|1A|G|2029
12DP|1|1A|A|2030
12DP|1|1A|A|2031
12DP|1|1A|G|2032
12DP|1|1A|A|2033
12DP|1|1A|U|2034
12DP|1|1A|G|2035
12DP|1|1A|C|2036

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21