HL_12DP_071
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGGAAACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_12DP_071 not in the Motif Atlas
- Geometric match to HL_9PN5_103
- Geometric discrepancy: 0.3473
- The information below is about HL_9PN5_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22758.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
12DP|1|1a|G|157
12DP|1|1a|G|158
12DP|1|1a|G|159
12DP|1|1a|A|160
12DP|1|1a|A|161
12DP|1|1a|A|162
12DP|1|1a|C|163
12DP|1|1a|U|164
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1T
- 50S ribosomal protein L19
- Chain 1t
- 30S ribosomal protein S20
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