HL_12DP_136

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

12DP|1|2A|C|1493, 12DP|1|2A|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_136 not in the Motif Atlas

Homologous match to HL_8B0X_065

Geometric discrepancy: 0.5281

The information below is about HL_8B0X_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

12DP|1|2A|G|1492
12DP|1|2A|C|1493
12DP|1|2A|A|1494
12DP|1|2A|A|1495
12DP|1|2A|A|1496
12DP|1|2A|U|1497
12DP|1|2A|C|1498

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2