HL_8B0X_065

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8B0X|1|a|C|1495, 8B0X|1|a|U|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B0X_065 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.0623

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8B0X|1|a|G|1494
8B0X|1|a|C|1495
8B0X|1|a|A|1496
8B0X|1|a|A|1497
8B0X|1|a|A|1498
8B0X|1|a|U|1499
8B0X|1|a|C|1500

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2