HL_12DP_148
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 12DP|1|2A|A|2030, 12DP|1|2A|A|2031, 12DP|1|2A|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_12DP_148 not in the Motif Atlas
- Homologous match to HL_7A0S_049
- Geometric discrepancy: 0.0917
- The information below is about HL_7A0S_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.4
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
12DP|1|2A|G|2027
12DP|1|2A|U|2028
12DP|1|2A|G|2029
12DP|1|2A|A|2030
12DP|1|2A|A|2031
12DP|1|2A|G|2032
12DP|1|2A|A|2033
12DP|1|2A|U|2034
12DP|1|2A|G|2035
12DP|1|2A|C|2036
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2E
- 50S ribosomal protein L3
- Chain 2V
- 50S ribosomal protein L21
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