HL_12DP_152

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

12DP|1|2A|A|2268, 12DP|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_152 not in the Motif Atlas

Homologous match to HL_8B0X_081

Geometric discrepancy: 0.0891

The information below is about HL_8B0X_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.4

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

14

Unit IDs

12DP|1|2A|C|2264
12DP|1|2A|U|2265
12DP|1|2A|A|2266
12DP|1|2A|A|2267
12DP|1|2A|A|2268
12DP|1|2A|A|2269
12DP|1|2A|G|2270
12DP|1|2A|G|2271
12DP|1|2A|U|2272
12DP|1|2A|A|2273
12DP|1|2A|A|2274
12DP|1|2A|C|2275
12DP|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16