HL_12DP_164

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

12DP|1|2A|G|2751, 12DP|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DP_164 not in the Motif Atlas

Homologous match to HL_8B0X_093

Geometric discrepancy: 0.1916

The information below is about HL_8B0X_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.5

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

13

Unit IDs

12DP|1|2A|C|2745
12DP|1|2A|U|2746
12DP|1|2A|G|2747
12DP|1|2A|A|2748
12DP|1|2A|A|2749
12DP|1|2A|A|2750
12DP|1|2A|G|2751
12DP|1|2A|C|2752
12DP|1|2A|A|2753
12DP|1|2A|U|2754
12DP|1|2A|C|2755
12DP|1|2A|U|2756
12DP|1|2A|A|2757
12DP|1|2A|A|2758
12DP|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6