HL_8B0X_093

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8B0X|1|a|G|2755, 8B0X|1|a|C|2759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B0X_093 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.056

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8B0X|1|a|C|2749
8B0X|1|a|U|2750
8B0X|1|a|G|2751
8B0X|1|a|A|2752
8B0X|1|a|A|2753
8B0X|1|a|A|2754
8B0X|1|a|G|2755
8B0X|1|a|C|2756
8B0X|1|a|A|2757
8B0X|1|a|U|2758
8B0X|1|a|C|2759
8B0X|1|a|U|2760
8B0X|1|a|A|2761
8B0X|1|a|A|2762
8B0X|1|a|G|2763

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13