HL_12DQ_032

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

12DQ|1|1A|G|1325, 12DQ|1|1A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_032 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.0948

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

12DQ|1|1A|G|1324
12DQ|1|1A|G|1325
12DQ|1|1A|U|1326
12DQ|1|1A|C|1327
12DQ|1|1A|G|1328
12DQ|1|1A|U|1329
12DQ|1|1A|C|1330

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17

Chain 1W

50S ribosomal protein L22