HL_12DQ_057
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CGUGUGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 12DQ|1|1A|U|2406
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_12DQ_057 not in the Motif Atlas
- Homologous match to HL_7A0S_058
- Geometric discrepancy: 0.1743
- The information below is about HL_7A0S_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51853.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
12DQ|1|1A|C|2404
12DQ|1|1A|G|2405
12DQ|1|1A|U|2406
12DQ|1|1A|G|2407
12DQ|1|1A|U|2408
12DQ|1|1A|G|2409
12DQ|1|1A|G|2410
12DQ|1|1A|A|2411
12DQ|1|1A|A|2412
12DQ|1|1A|G|2413
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1P
- 50S ribosomal protein L15
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