HL_12DQ_094

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

12DQ|1|1a|U|1136, 12DQ|1|1a|C|1137, 12DQ|1|1a|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_094 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.3305

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.6

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

12DQ|1|1a|G|1134
12DQ|1|1a|U|1135
12DQ|1|1a|U|1136
12DQ|1|1a|C|1137
12DQ|1|1a|G|1138
12DQ|1|1a|G|1139
12DQ|1|1a|C|1140

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains