HL_12DQ_101
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UGGCUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_12DQ_101 not in the Motif Atlas
- Homologous match to HL_7A0S_001
- Geometric discrepancy: 0.2151
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
12DQ|1|2A|U|59
12DQ|1|2A|G|60
12DQ|1|2A|G|61
12DQ|1|2A|C|62
12DQ|1|2A|U|63
12DQ|1|2A|A|64
12DQ|1|2A|C|65
12DQ|1|2A|C|66
12DQ|1|2A|U|67
12DQ|1|2A|G|68
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 22
- 50S ribosomal protein L29
- Chain 27
- 50S ribosomal protein L34
- Chain 2X
- 50S ribosomal protein L23
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