Motif HL_17803.4 Version HL_17803.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 5-6 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8GLP_078 | 8GLP | 0.3406 | 0 | L8 | 5.8S rRNA | C | 47 | A | 48 | G | 49 | C | 50 | U | 51 | A | 52 | G | 53 | C | 54 | PSU | 55 | G | 56 | cWW | |||
| 2 | HL_9SUM_068 | 9SUM | 0.1570 | 0 | C | 5.8S rRNA | C | 47 | A | 48 | G | 49 | C | 50 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | |||
| 3 | HL_8OI5_071 | 8OI5 | 0.0000 | 0 | Pseudoknot with intercalation (H) | 4 | 5.8S rRNA | C | 47 | A | 48 | G | 49 | C | 50 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | ||
| 4 | HL_9PN5_073 | 9PN5 | 0.1048 | 0 | A4 | 5.8S rRNA | C | 47 | A | 48 | G | 49 | C | 50 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | |||
| 5 | HL_9H3G_001 | 9H3G | 0.1216 | 0 | 3 | 5.8S rRNA | U | 51 | A | 52 | G | 53 | C | 54 | G | 55 | A | 56 | A | 57 | A | 58 | U | 59 | G | 60 | cWW | |||
| 6 | HL_9AXU_071 | 9AXU | 0.1944 | 0 | Pseudoknot with intercalation (H) | 4 | 5.8S rRNA | C | 55 | A | 56 | G | 57 | C | 58 | G | 59 | A | 60 | A | 61 | A | 62 | U | 63 | G | 64 | cWW | ||
| 7 | HL_9E6Q_001 | 9E6Q | 0.2738 | 0 | Pseudoknot with intercalation (H) | 1 | LSU rRNA | U | 51 | G | 52 | G | 53 | C | 54 | A | 55 | A | 56 | G | 57 | C | 58 | U | 59 | G | 60 | cWW | ncSH | ncSH |
| 8 | HL_4V9F_001 | 4V9F | 0.2639 | 0 | Pseudoknot with intercalation | 0 | LSU rRNA | U | 55 | G | 56 | C | 57 | C | 58 | A | 59 | A | 60 | G | 61 | C | 62 | U | 63 | G | 64 | cWW | cSH | |
| 9 | HL_9DFE_001 | 9DFE | 0.2717 | 0 | Pseudoknot with intercalation (H) | 1A | LSU rRNA | U | 59 | G | 60 | G | 61 | C | 62 | U | 63 | A | 64 | C | 65 | C | 66 | U | 67 | G | 68 | cWW | cSH | |
| 10 | HL_7A0S_001 | 7A0S | 0.2320 | 0 | Pseudoknot with intercalation | X | LSU rRNA | C | 58 | G | 59 | A | 60 | U | 61 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | cSH | |
| 11 | HL_4WF9_067 | 4WF9 | 0.3930 | 0 | Pseudoknot with intercalation | X | LSU rRNA | U | 59 | U | 60 | A | 61 | C | 62 | U | 63 | A | 64 | A | 65 | C | 66 | G | 67 | A | 68 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCGAAAUG | 4 |
| CAGCUAGCG | 1 |
| UAGCGAAAUG | 1 |
| UGGCAAGCUG | 1 |
| UGCCAAGCUG | 1 |
| UGGCUACCUG | 1 |
| CGAUUACCUG | 1 |
| UUACUAACGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCGAAAU | 5 |
| AGCUAGC(PSU) | 1 |
| GGCAAGCU | 1 |
| GCCAAGCU | 1 |
| GGCUACCU | 1 |
| GAUUACCU | 1 |
| UACUAACG | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Pseudoknot with intercalation (H) (4)
- Pseudoknot with intercalation (3)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.25 | Max 0.45
Coloring options: