HL_12DQ_133

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

12DQ|1|2A|A|1452, 12DQ|1|2A|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_133 not in the Motif Atlas

Geometric match to HL_9DFE_035

Geometric discrepancy: 0.1622

The information below is about HL_9DFE_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

12DQ|1|2A|C|1451
12DQ|1|2A|A|1452
12DQ|1|2A|U|1453
12DQ|1|2A|G|1455
12DQ|1|2A|G|1456
12DQ|1|2A|A|1457
12DQ|1|2A|C|1458
12DQ|1|2A|G|1459

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17