HL_12DQ_162

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

12DQ|1|2A|G|2751, 12DQ|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_162 not in the Motif Atlas

Homologous match to HL_8B0X_093

Geometric discrepancy: 0.187

The information below is about HL_8B0X_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.5

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

13

Unit IDs

12DQ|1|2A|C|2745
12DQ|1|2A|U|2746
12DQ|1|2A|G|2747
12DQ|1|2A|A|2748
12DQ|1|2A|A|2749
12DQ|1|2A|A|2750
12DQ|1|2A|G|2751
12DQ|1|2A|C|2752
12DQ|1|2A|A|2753
12DQ|1|2A|U|2754
12DQ|1|2A|C|2755
12DQ|1|2A|U|2756
12DQ|1|2A|A|2757
12DQ|1|2A|A|2758
12DQ|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13