HL_12DQ_180

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

12DQ|1|2a|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12DQ_180 not in the Motif Atlas

Homologous match to HL_8B0X_013

Geometric discrepancy: 0.1227

The information below is about HL_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27656.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

12DQ|1|2a|G|617
12DQ|1|2a|C|618
12DQ|1|2a|U|619
12DQ|1|2a|C|620
12DQ|1|2a|A|621
12DQ|1|2a|A|622
12DQ|1|2a|C|623

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2p

30S ribosomal protein S16