HL_1A4T_013

3D structure

PDB id

1A4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

1A4T|13|A|C|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1A4T_013 not in the Motif Atlas

Geometric match to HL_4AL5_001

Geometric discrepancy: 0.2046

The information below is about HL_4AL5_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

1A4T|13|A|U|8
1A4T|13|A|G|9
1A4T|13|A|A|10
1A4T|13|A|C|11
1A4T|13|A|A|12
1A4T|13|A|A|13
1A4T|13|A|A|14

Current chains

Chain A

BOXB RNA

Nearby chains

Chain B

20-MER BASIC PEPTIDE