1A4T Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1A4T_001 | 1/A/8:14 | GNRA | geometric HL_3D0U_003 HL_34789.5 | |
| HL_1A4T_002 | 2/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_021 | 3/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_004 | 4/A/8:14 | GNRA | geometric HL_3D0U_003 HL_34789.5 | |
| HL_1A4T_022 | 5/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_006 | 6/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_007 | 7/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_008 | 8/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_009 | 9/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_010 | 10/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_011 | 11/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_023 | 12/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_013 | 13/A/8:14 | GNRA | geometric HL_4AL5_001 HL_34789.5 | |
| HL_1A4T_014 | 14/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_024 | 15/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_016 | 16/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_017 | 17/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_018 | 18/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_025 | 19/A/8:14 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1A4T_020 | 20/A/8:14 | GNRA | geometric HL_5J7L_148 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1A4T_003 | tRNA anticodon loop | ||
| HL_1A4T_005 | Anticodon loop related | ||
| HL_1A4T_012 | tRNA anticodon loop | ||
| HL_1A4T_015 | tRNA anticodon loop | ||
| HL_1A4T_019 | tRNA anticodon loop |
Valid loops
No loops found
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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