HL_1ASY_001

3D structure

PDB id

1ASY (explore in PDB, NAKB, or RNA 3D Hub)

Description

CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

U(PSU)AA(H2U)GG(H2U)CAGA

Length

12 nucleotides

Bulged bases

1ASY|1|R|G|617, 1ASY|1|R|G|618, 1ASY|1|R|C|620

QA status

Modified nucleotides: PSU, H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1ASY_001 not in the Motif Atlas

Geometric match to HL_1F7U_001

Geometric discrepancy: 0.3684

The information below is about HL_1F7U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55043.2

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

1ASY|1|R|U|612
1ASY|1|R|PSU|613
1ASY|1|R|A|614
1ASY|1|R|A|615
1ASY|1|R|H2U|616
1ASY|1|R|G|617
1ASY|1|R|G|618
1ASY|1|R|H2U|619
1ASY|1|R|C|620
1ASY|1|R|A|621
1ASY|1|R|G|622
1ASY|1|R|A|623

Current chains

Chain R

T-RNA (75-MER)

Nearby chains

Chain A

ASPARTYL-tRNA SYNTHETASE