Motif HL_55043.2 Version HL_55043.2 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8JOZ_001 | 8JOZ | 0.2823 | 6 | B | tRNA | C | 12 | G | 13 | A | 14 | G | 15 | A | 21 | A | 22 | G | 23 | cWW | tSH | cWS |
| 2 | HL_9QRP_001 | 9QRP | 0.2655 | 6 | T | tRNA | C | 12 | G | 13 | A | 14 | G | 15 | A | 22 | A | 23 | G | 24 | cWW | ntSH | |
| 3 | HL_4JXZ_001 | 4JXZ | 0.0000 | 4 | B | tRNA | C | 912 | A | 913 | A | 914 | G | 915 | A | 921 | A | 922 | G | 923 | cWW | tSH | cWS |
| 4 | HL_1F7U_001 | 1F7U | 0.2428 | 5 | B | tRNA | C | 912 | C | 913 | A | 914 | A | 915 | A | 921 | C | 922 | G | 923 | cWW | ncWB | cWS |
| 5 | HL_1QTQ_001 | 1QTQ | 0.5405 | 4 | B | tRNA | C | 912 | A | 913 | A | 914 | G | 915 | A | 921 | A | 922 | G | 923 | cWW | tSH | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGCGGUAAG | 2 |
| CGAGCGGAAG | 1 |
| CGAGUGGCUGAAG | 1 |
| CCAAGGCACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCGGUAA | 2 |
| GAGC(OMG)G(H2U)(H2U)GAA | 1 |
| GAGUGGCUGAA | 1 |
| CAA(H2U)GG(H2U)CAC | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-cWS-F
- Heat map statistics
- Min 0.23 | Avg 0.33 | Max 0.73
Coloring options: