HL_1ASY_002

3D structure

PDB id

1ASY (explore in PDB, NAKB, or RNA 3D Hub)

Description

CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

C(PSU)UGUC(1MG)CG

Length

9 nucleotides

Bulged bases

1ASY|1|R|U|633

QA status

Modified nucleotides: PSU, 1MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1ASY_002 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3325

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

1ASY|1|R|C|631
1ASY|1|R|PSU|632
1ASY|1|R|U|633
1ASY|1|R|G|634
1ASY|1|R|U|635
1ASY|1|R|C|636
1ASY|1|R|1MG|637
1ASY|1|R|C|638
1ASY|1|R|G|639

Current chains

Chain R

T-RNA (75-MER)

Nearby chains

Chain A

ASPARTYL-tRNA SYNTHETASE