HL_1ASY_005

3D structure

PDB id

1ASY (explore in PDB, NAKB, or RNA 3D Hub)

Description

CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

C(PSU)UGUC(1MG)CG

Length

9 nucleotides

Bulged bases

1ASY|1|S|U|633

QA status

Modified nucleotides: PSU, 1MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1ASY_005 not in the Motif Atlas

Geometric match to HL_1IL2_002

Geometric discrepancy: 0.2444

The information below is about HL_1IL2_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

Anticodon loop

Motif group

HL_69186.3

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

1ASY|1|S|C|631
1ASY|1|S|PSU|632
1ASY|1|S|U|633
1ASY|1|S|G|634
1ASY|1|S|U|635
1ASY|1|S|C|636
1ASY|1|S|1MG|637
1ASY|1|S|C|638
1ASY|1|S|G|639

Current chains

Chain S

T-RNA (75-MER)

Nearby chains

Chain B

ASPARTYL-tRNA SYNTHETASE