HL_1ASZ_001

3D structure

PDB id

1ASZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

U(PSU)AA(H2U)GG(H2U)CAGA

Length

12 nucleotides

Bulged bases

1ASZ|1|R|G|617, 1ASZ|1|R|G|618, 1ASZ|1|R|C|620

QA status

Modified nucleotides: PSU, H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1ASZ_001 not in the Motif Atlas

Geometric match to HL_1F7U_001

Geometric discrepancy: 0.3824

The information below is about HL_1F7U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55043.2

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

1ASZ|1|R|U|612
1ASZ|1|R|PSU|613
1ASZ|1|R|A|614
1ASZ|1|R|A|615
1ASZ|1|R|H2U|616
1ASZ|1|R|G|617
1ASZ|1|R|G|618
1ASZ|1|R|H2U|619
1ASZ|1|R|C|620
1ASZ|1|R|A|621
1ASZ|1|R|G|622
1ASZ|1|R|A|623

Current chains

Chain R

T-RNA (75-MER)

Nearby chains

Chain A

ASPARTYL-tRNA SYNTHETASE