HL_1ATV_003

3D structure

PDB id

1ATV (explore in PDB, NAKB, or RNA 3D Hub)

Description

HAIRPIN WITH AGAA TETRALOOP, NMR, 4 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1ATV_003 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.3218

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

1ATV|3|A|C|6
1ATV|3|A|A|7
1ATV|3|A|G|8
1ATV|3|A|A|9
1ATV|3|A|A|10
1ATV|3|A|G|11

Current chains

Chain A

RNA (5'-R(*GP*GP*GP*AP*CP*CP*AP*GP*AP*AP*GP*GP*UP*CP*CP*CP*G)-3')

Nearby chains