Motif HL_37569.3 Version HL_37569.3 of this group appears in releases 4.2 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3EPH_002 | 3EPH | 0.4618 | 4 | E | tRNA | A | 31 | U | 32 | A | 36 | A | 38 | U | 39 | cWW | |||
| 2 | HL_3FOZ_005 | 3FOZ | 0.4580 | 4 | D | tRNA | A | 31 | U | 32 | A | 36 | A | 38 | U | 39 | cWW | ntsS | ||
| 3 | HL_9E6Q_023 | 9E6Q | 0.3633 | 1 | GNRA (H) | 1 | LSU rRNA | C | 830 | G | 831 | A | 833 | A | 834 | G | 835 | cWW | ntSH | |
| 4 | HL_9AXU_017 | 9AXU | 0.2052 | 1 | GNRA (H) | 2 | LSU rRNA | G | 876 | G | 877 | A | 879 | A | 880 | C | 881 | cWW | ntSH | |
| 5 | HL_8B0X_074 | 8B0X | 0.1778 | 1 | GNRA related (H) | a | LSU rRNA | C | 1808 | G | 1809 | A | 1811 | A | 1812 | G | 1813 | cWW | tSH | |
| 6 | HL_3OXE_002 | 3OXE | 0.1894 | 1 | GNRA related | A | Glycine riboswitch | G | 49 | G | 50 | A | 52 | A | 53 | C | 54 | cWW | ntSH | |
| 7 | HL_8G9Z_003 | 8G9Z | 0.0000 | 1 | GNRA related | E | Selenocysteine transfer RNA | C | 47||A|C | U | 47||A|D | G | 47||A|F | C | 47||A|G | G | 47||A|H | cWW | ntSH | |
| 8 | HL_3IGI_004 | 3IGI | 0.3687 | 2 | A | Group II catalytic intron D1-D4-3 | G | 135 | G | 136 | C | 139 | A | 140 | C | 141 | cWW | ntSH | ||
| 9 | HL_9J5P_002 | 9J5P | 0.6731 | 4 | A | tRNA | A | 32 | C | 33 | A | 37 | A | 39 | U | 40 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAAG | 2 |
| GGAAAC | 2 |
| AUUGCAAAU | 1 |
| AUUGAAAAU | 1 |
| CUAGCG | 1 |
| GGAACAC | 1 |
| ACU(A1L3P)AA(MIA)AU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 4 |
| UUGCAAA | 1 |
| UUGAAAA | 1 |
| UAGC | 1 |
| GAACA | 1 |
| CU(A1L3P)AA(MIA)A | 1 |
- Annotations
-
- (4)
- GNRA related (2)
- GNRA (H) (2)
- GNRA related (H) (1)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.40 | Max 0.75
Coloring options: