HL_1BJ2_004

3D structure

PDB id

1BJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, 8 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAACCAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1BJ2_004 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3169

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

1BJ2|2|B|G|6
1BJ2|2|B|A|7
1BJ2|2|B|A|8
1BJ2|2|B|C|9
1BJ2|2|B|C|10
1BJ2|2|B|A|11
1BJ2|2|B|U|12
1BJ2|2|B|C|13
1BJ2|2|B|C|14

Current chains

Chain B

RNA (5'-R(*GP*CP*AP*CP*CP*GP*AP*AP*CP*CP*AP*UP*CP*CP*GP*GP*UP*GP*C)-3')

Nearby chains

Chain A

RNA (5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*AP*UP*GP*GP*UP*UP*CP*GP*UP*UP*GP*CP*C)-3')