HL_1BN0_007

3D structure

PDB id

1BN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SL3 HAIRPIN FROM THE PACKAGING SIGNAL OF HIV-1, NMR, 11 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGGAGG

Length

6 nucleotides

Bulged bases

1BN0|7|A|G|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1BN0_007 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2873

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

1BN0|7|A|C|8
1BN0|7|A|G|9
1BN0|7|A|G|10
1BN0|7|A|A|11
1BN0|7|A|G|12
1BN0|7|A|G|13

Current chains

Chain A

SL3 RNA HAIRPIN

Nearby chains