HL_1C04_001
3D structure
- PDB id
- 1C04 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5 Å
Loop
- Sequence
- CUUAGAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 1C04|1|E|A|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1C04_001 not in the Motif Atlas
- Homologous match to HL_6PRV_001
- Geometric discrepancy: 0.13
- The information below is about HL_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20174.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1C04|1|E|C|14
1C04|1|E|U|15
1C04|1|E|U|16
1C04|1|E|A|17
1C04|1|E|G|18
1C04|1|E|A|19
1C04|1|E|A|20
1C04|1|E|G|21
1C04|1|E|C|22
1C04|1|E|A|23
1C04|1|E|G|24
Current chains
- Chain E
- 23S RRNA FRAGMENT
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN L11
Coloring options: