HL_1DK1_002

3D structure

PDB id

1DK1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1DK1_002 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.2605

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

1DK1|1|B|C|32
1DK1|1|B|U|33
1DK1|1|B|U|34
1DK1|1|B|C|35
1DK1|1|B|G|36
1DK1|1|B|G|37

Current chains

Chain B

RRNA FRAGMENT

Nearby chains

Chain A

30S RIBOSOMAL PROTEIN S15