1DK1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1DK1_001 | 1/B/8:13 | UNCG | geometric HL_1KUQ_001 HL_61337.5 | |
| HL_1DK1_003 | 1/B/33:36 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1DK1_002 | UNCG variation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1DK1_001 | 1/B/18:19, 1/B/50:53 | Major groove platform; stack outside cWW | geometric IL_1KUQ_001 IL_74641.3 | |
| IL_1DK1_002 | 1/B/21:22, 1/B/46:48 | Single bulged C | geometric IL_1KUQ_002 IL_05642.4 | |
| IL_1DK1_004 | 1/B/26:30, 1/B/39:42 | Tandem non-canonical cWW pairs | geometric IL_1G1X_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1DK1_003 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1DK1_001 | 1/B/4:6, 1/B/15:18, 1/B/53:54 | No text annotation | geometric J3_1KUQ_001 J3_01633.2 | |
| J3_1DK1_002 | 1/B/4:6, 1/B/15:19, 1/B/50:54 | No text annotation | geometric J3_1KUQ_002 J3_17385.6 |
Problematic loops
No problematic loops
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