HL_1DRZ_002

3D structure

PDB id

1DRZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1DRZ_002 not in the Motif Atlas

Geometric match to HL_4PR6_002

Geometric discrepancy: 0.047

The information below is about HL_4PR6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99373.1

Basepair signature

cWW-F-F-F-cSH-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1DRZ|1|B|C|147
1DRZ|1|B|A|148
1DRZ|1|B|U|149
1DRZ|1|B|U|150
1DRZ|1|B|G|151
1DRZ|1|B|C|152
1DRZ|1|B|A|153
1DRZ|1|B|C|154
1DRZ|1|B|U|155
1DRZ|1|B|C|156
1DRZ|1|B|C|157
1DRZ|1|B|G|158

Current chains

Chain B

RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME)

Nearby chains

Chain A

PROTEIN (U1 SMALL RIBONUCLEOPROTEIN A)