HL_1E8O_002

3D structure

PDB id

1E8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of the Alu domain of the mammalian SRP

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGCUACUCG

Length

10 nucleotides

Bulged bases (A, C, G, U)

138U, 139C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73255.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1E8O|1|E|C|131
1E8O|1|E|A|132
1E8O|1|E|G|133
1E8O|1|E|C|134
1E8O|1|E|U|135
1E8O|1|E|A|136
1E8O|1|E|C|137
1E8O|1|E|U|138
1E8O|1|E|C|139
1E8O|1|E|G|140

Current chains

Chain E

7SL RNA

Nearby chains

Chain A

SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN

Chain B

SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN