HL_1EI2_016

3D structure

PDB id

1EI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AGUACCUU

Length

8 nucleotides

Bulged bases

1EI2|16|A|C|15, 1EI2|16|A|U|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1EI2_016 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3429

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1EI2|16|A|A|10
1EI2|16|A|G|11
1EI2|16|A|U|12
1EI2|16|A|A|13
1EI2|16|A|C|14
1EI2|16|A|C|15
1EI2|16|A|U|16
1EI2|16|A|U|17

Current chains

Chain A

TAU EXON 10 SRE RNA

Nearby chains