Motif HL_71121.1 Version HL_71121.1 of this group appears in releases 3.89 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4YAZ_004 | 4YAZ | 0.5125 | 2 | Mini UNCG | R | Cyclic di-GMP-I riboswitch | C | 56 | C | 58 | G | 60 | cWW |
2 | HL_4LFB_005 | 4LFB | 0.6301 | 2 | Mini UNCG | A | SSU rRNA | C | 201 | U | 203 | G | 216 | cWW |
3 | HL_4V88_198 | 4V88 | 0.6027 | 3 | A6 | SSU rRNA | C | 491 | A | 492 | G | 496 | cWW | |
4 | HL_8C3A_039 | 8C3A | 0.5294 | 3 | 1 | LSU rRNA | A | 1756 | A | 1757 | U | 1761 | cWW | |
5 | HL_8C3A_054 | 8C3A | 0.1952 | 2 | 1 | LSU rRNA | C | 2543 | U | 2544 | G | 2547 | cWW | |
6 | HL_2ZNI_001 | 2ZNI | 0.1907 | 4 | C | bacterial tRNA | C | 13 | G | 14 | G | 21 | cWW | |
7 | HL_5J7L_143 | 5J7L | 0.1200 | 2 | DA | LSU rRNA | G | 319 | A | 320 | C | 323 | cWW | |
8 | HL_8VTW_010 | 8VTW | 0.1060 | 2 | 1A | LSU rRNA | C | 319 | A | 320 | G | 323 | cWW | |
9 | HL_4WF9_011 | 4WF9 | 0.1464 | 2 | X | LSU rRNA | C | 362 | A | 363 | G | 366 | cWW | |
10 | HL_7A0S_011 | 7A0S | 0.1566 | 2 | X | LSU rRNA | C | 330 | U | 331 | G | 334 | cWW | |
11 | HL_4V9F_011 | 4V9F | 0.1094 | 2 | 0 | LSU rRNA | G | 326 | A | 327 | C | 330 | cWW | |
12 | HL_8C3A_006 | 8C3A | 0.0636 | 2 | 1 | LSU rRNA | C | 207 | A | 208 | G | 211 | cWW | |
13 | HL_5TBW_006 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW | |
14 | HL_5U3G_001 | 5U3G | 0.0947 | 3 | B | Guanidine-I riboswitch | C | 18 | G | 19 | G | 23 | cWW | |
15 | HL_4WF9_003 | 4WF9 | 0.1373 | 3 | X | LSU rRNA | G | 122 | G | 123 | C | 127 | cWW | |
16 | HL_8G9Z_001 | 8G9Z | 0.1165 | 3 | E | Selenocysteine transfer RNA | G | 15||A | U | 16||A | C | 20||A|A | cWW | |
17 | HL_5XUZ_001 | 5XUZ | 0.1785 | 4 | B | crRNA | C | -12 | U | -11 | G | -6 | cWW | |
18 | HL_5ID6_001 | 5ID6 | 0.2097 | 4 | G | RNA (21-mer) | C | 11 | U | 12 | G | 17 | cWW | |
19 | HL_8H9D_001 | 8H9D | 0.2278 | 4 | G | RNA (21-mer) | C | 11 | U | 12 | G | 17 | cWW | |
20 | HL_5NFV_001 | 5NFV | 0.2473 | 3 | B | pre-crRNA | C | -10 | U | -9 | G | -5 | cWW | |
21 | HL_7KI3_001 | 7KI3 | 0.1790 | 3 | C | HCV genotype 1a miR-122 site-1 | C | 10 | U | 11 | G | 15 | cWW | |
22 | HL_2Y9H_003 | 2Y9H | 0.2127 | 3 | F | RNA (19-mer) | C | 11 | G | 12 | G | 16 | cWW | |
23 | HL_1WZ2_007 | 1WZ2 | 0.1981 | 3 | D | tRNA | C | 950 | G | 951 | G | 955 | cWW | |
24 | HL_4V9F_003 | 4V9F | 0.3664 | 2 | 0 | LSU rRNA | G | 118 | A | 119 | C | 122 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUAAGUG | 3 |
GAUAC | 2 |
CCCUG | 1 |
CUUUG | 1 |
CAUUCG | 1 |
AAUUUU | 1 |
CUCUG | 1 |
CGAAUAG | 1 |
CAGAG | 1 |
CAAAG | 1 |
CUCAG | 1 |
CACAG | 1 |
CAUAG | 1 |
CGAAAG | 1 |
GGAAAC | 1 |
GUGGUC | 1 |
CUGUUG | 1 |
CUGAUG | 1 |
CGCGUG | 1 |
CGUAGG | 1 |
GAAUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUA | 3 |
UAAGU | 3 |
GAAA | 2 |
CCU | 1 |
UUU | 1 |
AUUC | 1 |
AUUU | 1 |
UCU | 1 |
GAAUA | 1 |
AGA | 1 |
AAA | 1 |
UCA | 1 |
ACA | 1 |
UGGU | 1 |
UGUU | 1 |
UGAU | 1 |
GCGU | 1 |
GUAG | 1 |
AAU | 1 |
- Annotations
-
- (22)
- Mini UNCG (2)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.06 | Avg 0.32 | Max 0.84
Coloring options: