#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_4YAZ_0044YAZ0.51252Mini UNCGRCyclic di-GMP-I riboswitchC56C58G60cWW
2 HL_4LFB_0054LFB0.63012Mini UNCGA SSU rRNAC201U203G216cWW
3 HL_4V88_1984V880.60273A6 SSU rRNAC491A492G496cWW
4 HL_8C3A_0398C3A0.529431 LSU rRNAA1756A1757U1761cWW
5 HL_8C3A_0548C3A0.195221 LSU rRNAC2543U2544G2547cWW
6 HL_2ZNI_0012ZNI0.19074Cbacterial tRNAC13G14G21cWW
7 HL_5J7L_1435J7L0.12002DA LSU rRNAG319A320C323cWW
8 HL_8VTW_0108VTW0.106021A LSU rRNAC319A320G323cWW
9 HL_4WF9_0114WF90.14642X LSU rRNAC362A363G366cWW
10 HL_7A0S_0117A0S0.15662X LSU rRNAC330U331G334cWW
11 HL_4V9F_0114V9F0.109420 LSU rRNAG326A327C330cWW
12 HL_8C3A_0068C3A0.063621 LSU rRNAC207A208G211cWW
13 HL_5TBW_0065TBW0.000021 LSU rRNAC208A209G212cWW
14 HL_5U3G_0015U3G0.09473BGuanidine-I riboswitchC18G19G23cWW
15 HL_4WF9_0034WF90.13733X LSU rRNAG122G123C127cWW
16 HL_8G9Z_0018G9Z0.11653ESelenocysteine transfer RNAG15||AU16||AC20||A|AcWW
17 HL_5XUZ_0015XUZ0.17854BcrRNAC-12U-11G-6cWW
18 HL_5ID6_0015ID60.20974GRNA (21-mer)C11U12G17cWW
19 HL_8H9D_0018H9D0.22784GRNA (21-mer)C11U12G17cWW
20 HL_5NFV_0015NFV0.24733Bpre-crRNAC-10U-9G-5cWW
21 HL_7KI3_0017KI30.17903CHCV genotype 1a miR-122 site-1C10U11G15cWW
22 HL_2Y9H_0032Y9H0.21273FRNA (19-mer)C11G12G16cWW
23 HL_1WZ2_0071WZ20.19813DtRNAC950G951G955cWW
24 HL_4V9F_0034V9F0.366420 LSU rRNAG118A119C122cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAAGUG3
GAUAC2
CCCUG1
CUUUG1
CAUUCG1
AAUUUU1
CUCUG1
CGAAUAG1
CAGAG1
CAAAG1
CUCAG1
CACAG1
CAUAG1
CGAAAG1
GGAAAC1
GUGGUC1
CUGUUG1
CUGAUG1
CGCGUG1
CGUAGG1
GAAUC1
Non-Watson-Crick part of the motif
SequenceCounts
AUA3
UAAGU3
GAAA2
CCU1
UUU1
AUUC1
AUUU1
UCU1
GAAUA1
AGA1
AAA1
UCA1
ACA1
UGGU1
UGUU1
UGAU1
GCGU1
GUAG1
AAU1

Release history

Release3.893.90
Date2024-10-092024-11-06
StatusNew id, > 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (22)
  • Mini UNCG (2)
  • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.06 | Avg 0.32 | Max 0.84
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.5637 s