HL_1F27_001

3D structure

PDB id

1F27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF A BIOTIN-BINDING RNA PSEUDOKNOT

Experimental method

X-RAY DIFFRACTION

Resolution

1.3 Å

Loop

Sequence

UCAGAGGACA

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.2

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

1F27|1|A|U|7
1F27|1|A|C|8
1F27|1|A|A|9
1F27|1|A|G|10
1F27|1|A|A|11
1F27|1|A|G|12
1F27|1|A|G|13
1F27|1|A|A|14
1F27|1|A|C|15
1F27|1|A|A|16

Current chains

Chain A

RNA (5'-R(*AP*CP*CP*GP*UP*CP*AP*GP*AP*GP*GP*AP*CP*AP*CP*GP*GP*UP*U)-3')

Nearby chains

Chain B

RNA (5'-R(*AP*AP*AP*AP*AP*GP*UP*CP*CP*UP*C)-3')