Motif HL_55436.1 Version HL_55436.1 of this group appears in releases 3.89 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SUX_001 | 3SUX | 0.5799 | 0 | X | THF riboswitch | A | 38 | C | 39 | G | 40 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | U | 46 | U | 47 | ncWW | ncWW | |
| 2 | HL_2JLT_001 | 2JLT | 0.0000 | 0 | A | R06 | G | 5 | G | 6 | U | 7 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW | |
| 3 | HL_6VMY_005 | 6VMY | 0.4274 | 0 | A | Cobalamin riboswitch | U | 333 | C | 334 | U | 335 | G | 336 | C | 337 | G | 338 | A | 339 | G | 340 | G | 341 | A | 342 | cWW | ||
| 4 | HL_1F27_001 | 1F27 | 0.7822 | 0 | Pseudoknot geometry | A | RNA (19-mer) | U | 7 | C | 8 | A | 9 | G | 10 | A | 11 | G | 12 | G | 13 | A | 14 | C | 15 | A | 16 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGGGGAGUU | 1 |
| GGUCCCAGAC | 1 |
| UCUGCGAGGA | 1 |
| UCAGAGGACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGGGGAGU | 1 |
| GUCCCAGA | 1 |
| CUGCGAGG | 1 |
| CAGAGGAC | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.43 | Avg 0.53 | Max 0.88
Coloring options: