Motif HL_55436.1 Version HL_55436.1 of this group appears in releases 3.89 to 3.98

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-9
1	HL_3SUX_001	3SUX	0.5799		X	THF riboswitch	A	38	C	39	G	40	G	41	G	42	G	43	A	44	G	45	U	46	U	47	ncWW	ncWW
2	HL_2JLT_001	2JLT	0.0000		A	R06	G	5	G	6	U	7	C	8	C	9	C	10	A	11	G	12	A	13	C	14	cWW	cWW
3	HL_6VMY_005	6VMY	0.4274		A	Cobalamin riboswitch	U	333	C	334	U	335	G	336	C	337	G	338	A	339	G	340	G	341	A	342	cWW
4	HL_1F27_001	1F27	0.7822	Pseudoknot geometry	A	RNA (19-mer)	U	7	C	8	A	9	G	10	A	11	G	12	G	13	A	14	C	15	A	16	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACGGGGAGUU	1
GGUCCCAGAC	1
UCUGCGAGGA	1
UCAGAGGACA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CGGGGAGU	1
GUCCCAGA	1
CUGCGAGG	1
CAGAGGAC	1

Release history

Release	3.89	3.90	3.91	3.92	3.93	3.94	3.95	3.96	3.97	3.98
Date	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26	2025-04-23	2025-05-21	2025-06-18
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Pseudoknot geometry (1)
Basepair signature: cWW-F-F-F-F-F-F-F-F
Heat map statistics: Min 0.43 | Avg 0.53 | Max 0.88

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