HL_1F6U_012

3D structure

PDB id

1F6U (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop sl2 of the psi-RNA packaging signal. Implications for genome recognition

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGGUGA

Length

6 nucleotides

Bulged bases

1F6U|12|B|G|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1F6U_012 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1927

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1F6U|12|B|U|207
1F6U|12|B|G|208
1F6U|12|B|G|209
1F6U|12|B|U|210
1F6U|12|B|G|211
1F6U|12|B|A|212

Current chains

Chain B

HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING

Nearby chains

Chain A

HIV-1 NUCLEOCAPSID PROTEIN