HL_1FFK_009

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

1FFK|1|0|C|318

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_009 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.0629

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

1FFK|1|0|U|312
1FFK|1|0|U|313
1FFK|1|0|G|314
1FFK|1|0|G|315
1FFK|1|0|A|316
1FFK|1|0|A|317
1FFK|1|0|C|318
1FFK|1|0|A|319

Current chains

Chain 0

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L24