HL_1FFK_010

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUGACAACC

Length

9 nucleotides

Bulged bases

1FFK|1|0|G|336, 1FFK|1|0|A|337, 1FFK|1|0|C|338

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_010 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.0497

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

1FFK|1|0|G|334
1FFK|1|0|U|335
1FFK|1|0|G|336
1FFK|1|0|A|337
1FFK|1|0|C|338
1FFK|1|0|A|339
1FFK|1|0|A|340
1FFK|1|0|C|341
1FFK|1|0|C|342

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain Q

RIBOSOMAL PROTEIN L24