HL_1FFK_014

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UCAGAAG

Length

7 nucleotides

Bulged bases

1FFK|1|0|A|497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_014 not in the Motif Atlas

Homologous match to HL_4V9F_016

Geometric discrepancy: 0.066

The information below is about HL_4V9F_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

1FFK|1|0|U|493
1FFK|1|0|C|494
1FFK|1|0|A|495
1FFK|1|0|G|496
1FFK|1|0|A|497
1FFK|1|0|A|498
1FFK|1|0|G|499

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

RIBOSOMAL PROTEIN L22