HL_1FFK_016

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUUUGAAAAA

Length

10 nucleotides

Bulged bases

1FFK|1|0|A|631

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_016 not in the Motif Atlas

Geometric match to HL_4WF9_018

Geometric discrepancy: 0.2119

The information below is about HL_4WF9_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

1FFK|1|0|U|623
1FFK|1|0|U|624
1FFK|1|0|U|625
1FFK|1|0|U|626
1FFK|1|0|G|627
1FFK|1|0|A|628
1FFK|1|0|A|629
1FFK|1|0|A|630
1FFK|1|0|A|631
1FFK|1|0|A|632

Current chains

Chain 0

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L15

Chain V

RIBOSOMAL PROTEIN L32E