HL_1FFK_017

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAGUAUC

Length

7 nucleotides

Bulged bases

1FFK|1|0|G|672, 1FFK|1|0|A|674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_017 not in the Motif Atlas

Homologous match to HL_4V9F_019

Geometric discrepancy: 0.0477

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41169.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

4

Unit IDs

1FFK|1|0|G|670
1FFK|1|0|A|671
1FFK|1|0|G|672
1FFK|1|0|U|673
1FFK|1|0|A|674
1FFK|1|0|U|675
1FFK|1|0|C|676

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4